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  1. Moon K, JH Jeon, I Kang, KS Park, K Lee, C.-J. Cha, SH Lee, JC Cho. 2020. Freshwater viral metagenome reveals novel and functional phage-borne antibiotic resistance genes.  Microbiome. 8(1):75. doi: 10.1186/s40168-020-00863-4.
  2. Lee, K., D.-W. Kim, D.-H. Lee, Y.-S. Kim, J.-H. Bu, J.-H. Cha, C. N. Thawng, E.-M. Hwang, H. J. Seong, W. J. Sul, E. M. H. Wellington, C. Quince and C.-J. Cha. 2020. Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance. Microbiome 8(1):2. doi: 10.1186/s40168-019-0774-7.
  3. Lee, J. Y., H. Lee, M. Park, C.-J. Cha, D. Shin and K. S. Ko. 2019. Lytic transglycosylase contributes to the survival of lipooligosaccharide-deficient, colistin-dependent Acinetobacter baumannii. Clin. Microbiol. Infect. pii: S1198-743X(19)30050-3. doi: 10.1016/j.cmi.2019.02.004
  4. Kim, D.-W., C. N. Thawng, K. Lee, E. M. H. Wellington and C.-J. Cha. 2019. A novel sulfonamide resistance mechanism by two-component flavin-dependent monooxygenase system in sulfonamide-degrading actinobacteria. Environ. Int. 127:206-215
  5. Oh, S., D. Choi and C.-J. Cha. 2019. Ecological processes underpinning microbial community structure during exposure to subinhibitory level of triclosan. Sci. Rep. 9(1):4598
  6. Kim, D.-W., K. Lee, D.-H. Lee and C.-J. Cha. 2018. Comparative genomic analysis of pyrene-degrading Mycobacterium species: Genomic islands and ring-hydroxylating dioxygenases involved in the pyrene degradation. J. Microbiol. 56(11):798-804
  7. Cha, J.-H., J. J. Yoon and C.-J. Cha. 2018. Functional characterization of a thermostable endoglucanase belonging to glycoside hydrolase family 45 from Fomitopsis palustris. Appl. Microbiol. Biotechnol. 102(15): 6515-6523
  8. Kim, D.-W., C. N. Thawng, K. Lee and C.-J. Cha. 2018. Revisiting Polymorphic Diversity of Aminoglycoside N-Acetyltransferase AAC(6’)-Ib Based on Bacterial Genomes of Human, Animal, and Environmental Origins. Front. Microbiol. doi:10.3389/fmicb.2018.01831
  9. Choi, J.-H, K. Lee, D.-W. Kim, D. Y. Kil, G.-B. Kim and C.-J. Cha. 2018. Influence of dietary avilamycin on ileal and cecal microbiota in broiler chickens. Poult. Sci. 97(3): 970-979
  10. Kim, Y.-S. and C.-J. Cha. 2018. Paenibacillus translucens sp. nov., isolated from tidal flat sediment. Int. J. Sys. Evol. Microbiol. 68(3): 936-941
  11. Bu, J.-H. and C.-J. Cha. 2018. Flavobacterium foetidum sp. nov., isolated from ginseng soil. Int. J. Sys. Evol. Microbiol. 68(2): 616-622
  12. Nahar, S. and C.-J. Cha. 2018. Paenibacillus limicola sp. nov., isolated from tidal flat sediment. Int. J. Sys. Evol. Microbiol. 68(1): 423-426
  13. Kim, D.-W., C. N. Thawng, J.-H Choi, K. Lee and C.-J. Cha. 2018. Polymorphism of antibiotic-inactivating enzyme driven by ecology expands the environmental resistome. ISME J. 12: 267-276
  14. Lee, CR, JH Lee, KS Park, JH Jeon, YB Kim, C.-J. Cha, BC Jeong and SH Lee. 2017. Antimicrobial Resistance of Hypervirulent Klebsiella pneumoniae: Epidemiology, Hypervirulence-Associated Determinants, and Resistance Mechanisms. Front. Cell. Infect. Microbiol. 7:483. doi: 10.3389/fcimb.2017.00483
  15. Lee, D.-H. and C.-J. Cha. 2017. Ramlibacter alkalitolerans sp. nov., alkali-tolerant bacterium isolated from soil of ginseng. Int. J. Sys. Evol. Microbiol. 67(11): 4619-4623
  16. Kim, D.-W., C. N. Thawng, S. H. Lee and C.-J. Cha. 2017. Unique Features of Aeromonas Plasmid pAC3 and Expression of the Plasmid-Mediated Quinolone Resistance Genes. mSphere 2(3). pii: e00203-17
  17. Lee, CR, JH Lee, M Park, KS Park, IK Bae, YB Kim, C.-J. Cha, BC Jeong and SH Lee. 2017. Biology of Acinetobacter baumannii: Pathogenesis, Antibiotic Resistance Mechanisms, and Prospective Treatment Options. Front. Cell. Infect. Microbiol. 7:55. doi: 10.3389/fcimb.2017.00055
  18. Lee, D.-H. and C.-J. Cha. 2016. Flavihumibacter sediminis sp. nov., isolated from tidal flat sediment. Int. J. Sys. Evol. Microbiol. 66(11): 4310–4314
  19. Choi, J.-H., J.-H. Seok, H.-J. Jang, J.-H. Cha and C.-J. Cha. 2016. Cohnella saccharovorans sp. nov., isolated from ginseng soil. Int. J. Sys. Evol. Microbiol. 66(4): 1713–1717
  20. Song, K., J. Lee, C.-J. Cha and H. Kang. 2015. Effects of Phragmites invasion on soil microbial activity and structure in a brackish marsh. Plant Soil 392(1): 45–56
  21. Unno, T., J.-H. Choi, H.-G. Hur, M. J. Sadowsky, Y.-T. Ahn, C.-S. Huh, G. B. Kim and C.-J. Cha. 2015. Changes in human gut microbiota influenced by probiotic fermented milk ingestion. J. Dairy Sci. 98(6): 3568-3576
  22. Choi, J.-H., K. M. Lee, M. K. Lee, C.-J. Cha. And G. B. Kim. 2014. Bifidobacterium faecale sp. nov., isolated from human feces. Int. J. Sys. Evol. Microbiol. 64(9): 3134-3139
  23. Choi, J. H., G. B. Kim and C.-J. Cha. 2014. Spatial heterogeneity and stability of bacterial community in the gastrointestinal tracts of broiler chickens. Poult. Sci. 93(8): 1942-1950
  24. Choi, J.-H., J.-H. Seok, J.-H. Cha and C.-J. Cha. 2014. Lysobacter panacisoli sp. nov., isolated from ginseng soil. Int. J. Sys. Evol. Microbiol. 64(7): 2193–2197
  25. Kim, B.-S., H. Yi, J. Chun and C.-J. Cha. 2014. Genome sequence of type strain of Staphylococcus aureus subsp. Aureus. Gut Pathogens 6(1): 6
  26. Choi, J.-H., and C.-J. Cha. 2014. Bacillus panacisoli sp. nov., isolated from ginseng soil. Int. J. Sys. Evol. Microbiol. 64(3): 901–906
  27. Yi, H, J. Chun and C.-J. Cha. 2014. Genomic insights into the taxonomic status of the three subspecies of Bacillus subtilis. Sys. Appl. Microbiol. 37(2): 95-9
  28. Rahman, M. M., and C.-J. Cha. 2013. Ferrimonas gelatinilytica sp. nov., isolated from tidal flat sediment. Int. J. Sys. Evol. Microbiol. 63(11): 4309-4314
  29. Park, S. J., J.-H. Choi, C.-J. Cha. 2013. Chryseobacterium aestuarii sp. nov., isolated from the wetland of Han River, Korea. Int. J. Sys. Evol. Microbiol. 63(3): 1062-1068
  30. Thawng, C. N., S. J. Park, Cha JH, C.-J. Cha. 2013. Stakelama sediminis sp. nov., isolated from tidal flat sediment. Int. J. Sys. Evol. Microbiol. 63(2): 560 - 564
  31. Kim, Y.-H., W.-S. Song, H. Go, C.-J. Cha, C. Lee, M.-H. Yu, P. C. K. Lau, K. Lee. 2013. 2-Nitrobenzoate 2-nitroreductase (NbaA) switches its substrate specificity from 2-nitrobenzoic acid to 2,4-dinitrobenzoic acid under oxidizing conditions. J. Bacteriol. 195(2): 180-192.
  32. Cha, J.-H., C.-J. Cha. 2013. Gordonia alkaliphila sp. nov., an actinomycete isolated from tidal flat sediment from the Yellow Sea, Korea. Int. J. Sys. Evol. Microbiol. 63(1): 327 - 331
  33. Park, E.J., J. Chun, C.-J. Cha, W. S. Park, C. O. Jeon and J. W. Bae. 2012. Bacterial community analysis during fermentation of ten representative kinds of kimchi with barcoded pyrosequencing. Food Microbiol. 30(1): 197-204.
  34. Yeo, I. C., N. K. Lee, C.-J. Cha and Y. T. Hahm. 2012. Interspecies Interaction of Signal Peptide PapR Secreted by Bacillus cereus and Its Effect on Production of Antimicrobial Peptide. Appl. Biochem. Biotechnol. 166(3): 700-710.
  35. Go, H., C. J. Moore, M. Lee, E. Shin, C. O. Jeon, C.-J. Cha, S. H. Han, S.-J. Kim, S.-W. Lee, Y. Lee, N.-C. Ha, Y.-H. Kim, S. N. Cohen and K. Lee. 2011. Upregulation of RNase E activity by mutation of a site that uncompetitively interferes with RNA binding. RNA Biology 8(6): 1022-1034.
  36. Kim, H.-J., H.-J., S.-J. Eom, S.-J. Park, C.-J. Cha and G.-B. Kim. 2011. Lactobacillus alvi sp. nov., isolated from the intestinal tract of chicken. FEMS Microbiol. Lett. 323(1): 83-87.
  37. Ham, J.-S., H.-W. Kim, K.-H. Seol, A. Jang, S.-G. Jeong, M.-H. Oh, D.-H. Kim, D.-K. Kang, G.-B. Kim and C.-J. Cha. 2011. Genome Sequence of Lactobacillus salivarius NIAS840, Isolated from Chicken Intestine. J. Bacteriol. 193(19): 5551-5552.
  38. Yeo, I. C., N. K. Lee, C.-J. Cha and Y. T. Hahm. 2011. Narrow antagonistic activity of antimicrobial peptide from Bacillus subtilis SCK-2 against Bacillus cereus. J Biosci. Bioeng. 112(4): 338-344.
  39. Choi, J. Y., A. R. Park, Y. J. Kim, J. J. Kim, C.-J. Cha and J. J. Yoon. 2011. Purification and characterization of an extracellular beta-glucosidase produced by Phoma sp. KCTC11825BP isolated from rotten mandarin peel. J. Microbiol. Biotechnol. 21(5): 503-508.
  40. Thawng, C. N., J.-Y. Ryu, J. Han, C.-J. Cha, and H.-G. Hur. 2011. Biotransformation of N-Heterocyclic Compounds 1-Phenylpyrazole and 1-Phenylpyrrole by Escherichia coli (pDTG141) Expressing Naphthalene Dioxygenase of Pseudomonas sp. Strain NCIB 9816-4. J. Korean Soc. Appl. Biol. Chem. 54(2): 229-236.
  41. Kim, K.-Y., S. J. Park, Y. T. Hahm and C.-J. Cha. 2011. Marinitalea sucinacia gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from tidal flat sediment. FEMS Microbiol. Lett. 314(1): 89-94
  42. Ji, H. W. and C.-J. Cha. 2010. Identification and Functional Analysis of a Gene Encoding β-Glucosidase from the Brown-Rot Basidiomycete Fomitopsis palustris. J. Microbiol. 48(6): 808-813
  43. Choi, M.-J., J.-Y. Bae, K.-Y. Kim, H. Kang and C.-J. Cha. 2010. Brevibacillus fluminis sp. nov., isolated from the sediment of estuarine wetland of Han river, Korea. Int. J. Sys. Evol. Microbiol. 60(7): 1595-1599
  44. Kim, K.-Y., S. Lee and C.-J. Cha. 2010. Biotransformation of Plant Secondary Metabolite Decursin by Mycobacterium sp. PYR1001. J. Agric. Food Chem. 58(5): 2931-2934
  45. Bae, J.-Y., J.-H. Kim, K.-Y. Kim, K. Lee, J.-C. Cho and C.-J. Cha. 2010. Paenibacillus aestuarii sp. nov., isolated from the estuarine wetland of Han river, Korea. Int. J. Syst. Evol. Microbiol. 60(3): 644-647
  46. Sim, S. H., J. H. Yeom, C. Shin, W. S. Song, E. Shin, H. M. Kim, C.-J. Cha, S. H. Han, N. C. Ha, S. W. Kim, Y. Hahn, J. Bae and K. Lee. 2010. Escherichia coli ribonuclease III activity is downregulated by osmotic stress: consequences for the degradation of bdm mRNA in biofilm formation. Mol. Microbiol. 75(2): 413-425
  47. Kim, J.-H., K.-Y. Kim and C.-J. Cha. 2009. Flavobacterium chungangense sp. nov., isolated from a freshwater lake. Int. J. Syst. Evol. Microbiol. 59(7): 1754-1758
  48. Kim, H. M., S. M. Ryou, W.S. Song, S.H. Sim, C.-J. Cha, S. H. Han, N. C. Ha, J. H. Kim, J. Bae, P. R. Cunningham, K. Lee. 2009. Genetic analysis of the invariant residue G791 in Escherichia coli 16S rRNA implicates RelA in ribosome function. J. Bacteriol. 191(7): 2042-2050
  49. Kim, Y.-H., C.-J. Cha, K. H. Engesser, S.J. Kim. 2008. Degradation of various alkyl ethers by alkyl ether-degrading Actinobacteria isolated from activated sludge of a mixed wastewater treatment. Chemosphere 73(9): 1442-1447
  50. Yoon, J.-J., C.-J. Cha, Y.-S. Kim and W. Kim. 2008. Degradation of cellulose by the major endoglucanase produced from the brown-rot fungus Fomitopsis pinicola. Biotechnol. Lett. 30(8): 1373-1378
  51. Kim, E.-K., C.-J. Cha, Y.-J. Cho, Y.-B. Cho and J.-H. Roe. 2008. Synthesis of gamma-glutamylcysteine as a major low-molecular-weight thiol in lactic acid bacteria Leuconostoc spp. Biochem. Biophys. Res. Commun. 369(4): 1047-1051
  52. Song, B.-C., K.-Y. Kim, J.-J. Yoon, S.-H. Sim, K. Lee, Y.-S. Kim, Y.-K. Kim, C.-J. Cha. 2008. Functional Analysis of a Gene Encoding Endoglucanase that Belongs to Glycosyl Hydrolase Family 12 from the Brown-Rot Basidiomycete Fomitopsis palustris. J. Microbiol. Biotechnol. 18(3): 404-409
  53. Yoon, J.-J., K-Y Kim and C.-J. Cha. 2008. Purification and Characterization of Thermostable -Glucosidase from the Brown-Rot Basidiomycete Fomitopsis palustris Grown on Microcrystalline Cellulose. J. Microbiol. 46(1): 51-55
  54. Kim, J.-H., K.-Y. Kim, Y.-T. Hahm, B.-S. Kim, J. Chun and C.-J. Cha. 2008. Actibacter sediminis gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from tidal flat sediment. Int. J. Sys. Evol. Microbiol. 58(1): 139-143
  55. Song, W. S., H. M. Kim, J. H. Kim, S. H. Sim, S. M. Ryou, S. Kim, C.-J. Cha, P. R. Cunningham, J. Bae, K. Lee. 2007. Functional analysis of the invariant residue G791 of Escherichia coli 16S rRNA. J. Microbiol. 45(5): 418-421
  56. Kim, H. L., E. K. Shin, H. M. Kim, S. M. Ryou, S. Kim, C.-J. Cha, J. Bae, K. Lee. 2007. Heterogeneous rRNAs are differentially expressed during the morphological development of Streptomyces coelicolor. FEMS Microbiol. Lett. 275(1): 146-152
  57. Yoon, J.-J., C.-J. Cha, Y.-S. Kim, D.-W. Son, and Y.-K. Kim. 2007. The Brown-Rot Basidiomycete Fomitopsis palustris Has the Endo-Glucanases Capable of Degrading Microcrystalline Cellulose. J. Microbiol. Biotechnol. 17(5): 800-805
  58. Cha, C.-J. 2006. Catechol 1,2-dioxygenase from Rhodococcus rhodochrous N75 capable of metabolizing alkyl-substituted catechols. J. Microbiol. Biotechnol. 16(5): 778-785
  59. Park, J.-H., C.-J. Cha and J.-H. Roe. 2006. Identification of genes for the mycothiol biosynthesis in Streptomyces coelicolor A3(2). J. Microbiol. 44(1): 121-125
  60. Lee, E.-J., N. Karoonuthaisiri, H.-S. Kim, J.-H. Park, C.-J. Cha, C. M. Kao and J.-H. Roe. 2005. A master regulator sigB governs osmotic and oxidative response as well as differentiation via a network of sigma factors in Streptomyces coelicolor. Mol. Microbiol. 57(5): 1252-1264
  61. Shin, K.-H., Y. Lim, J.-H. Ahn, J. Khil, C.-J. Cha and H.-G. Hur. 2005. Anaerobic biotransformation of dinitrotoluene isomers by Lactococcus lactis subsp. lactis strain 27 isolated from earthworm intestine. Chemosphere 61(1): 30-39
  62. Seo, J., Y.-G. Lee, S.-D. Kim, C.-J. Cha, J.-H. Ahn and H.-G. Hur. 2005. Biodegradation of Insecticide N,N- Diethyl-m-Toluamide (DEET) by Fungi: Identification and Toxicity of Its Metabolites. Arch. Environ. Contam. Toxicol. 48(3): 323-328
  63. Kim, S.-J., R. C. Jones, C.-J. Cha, O. Kweon, R. D. Edmondson and C. E. Cerniglia. 2004. Identification of Proteins Induced by Polycyclic Aromatic Hydrocarbon in Mycobacterium vanbaalenii PYR-1 Using Two-Dimensional Polyacrylamide Gel Electrophoresis and de novo Sequencing Methods. Proteomics 4(12): 3899-3908
  64. Cha, C.-J. and N. C. Bruce. 2003. Stereo- and regiospecific cis,cis-muconate cycloisomerization by Rhodococcus rhodochrous N75. FEMS Microbiol. Lett. 224 (1): 29-34
  65. Cha, C.-J., S.-J. Kim, Yong-Hak Kim, Robin Stingley and C. E. Cerniglia. 2002. Molecular cloning, expression and characterization of a novel glutathione S-transferase class from the fungus Cunninghamella elegans. Biochem. J. 368(2): 589-595
  66. Kim, Y.-H., C.-J. Cha and C. E. Cerniglia. 2002. Purification and characterization of an erythromycin esterase from an erythromycin-resistant Pseudomonas sp. FEMS Microbiol. Lett. 210 (2): 239-244
  67. Cha, C.-J., B. F. Coles and C. E. Cerniglia. 2001. Purification and characterization of a glutathione S-transferase from the fungus Cunninghamella elegans. FEMS Microbiol. Lett. 203 (2): 257-261
  68. Cha, C.-J., D. R. Doerge and C. E. Cerniglia. 2001. Biotransformation of malachite green by the fungus Cunninghamella elegans. Appl. Environ. Microbiol. 67 (9): 4358-4360
  69. Cha, C.-J. 2001. Biological production of optically active muconolactones by Rhodococcus rhodochrous. Appl. Microbiol. Biotechnol. 56 (3-4): 453-457
  70. Cha, C.-J., R. B. Cain and N. C. Bruce. 1998. Enzymology of 3-methylmuconolactone metabolism in Rhodococcus rhodochrous N75: a modified ortho-cleavage pathway. J. Bacteriol. 180 (24): 6668-6673