1. Lee, DH., Lee, K., Kim, YS., Cha CJ. 2024.
Comprehensive genomic landscape of antibiotic resistance in Staphylococcus
epidermidis. mSystems 0:e00226-24.https://doi.org/10.1128/msystems.00226-24
2. Kim, YS., Hwang, EM.,
Jeong, CM., Cha CJ. 2023. Flavobacterium psychrotrophum sp.
nov. and Flavobacterium panacagri sp. nov., Isolated from
Freshwater and Soil. J Microbiol. 61:891–901.
https://doi.org/10.1007/s12275-023-00081-1
3. Yin X, Chen X, Jiang XT, Yang Y, Li B,
Shum MH, Lam TTY, Leung GM, Rose J, Sanchez-Cid C, Vogel TM, Walsh F, Berendonk
TU, Midega J, Uchea C, Frigon D, Wright GD, Bezuidenhout C, Picão RC, Ahammad
SZ, Nielsen PH, Hugenholtz P, Ashbolt NJ, Corno G, Fatta-Kassinos D, Bürgmann
H, Schmitt H, Cha CJ, Pruden A, Smalla K, Cytryn E, Zhang Y, Yang M, Zhu
YG, Dechesne A, Smets BF, Graham DW, Gillings MR, Gaze WH, Manaia CM, van
Loosdrecht MCM, Alvarez PJJ, Blaser MJ, Tiedje JM, Topp E, Zhang T. 2023.
Toward a Universal Unit for Quantification of Antibiotic Resistance Genes
in Environmental Samples. Environ Sci Technol. doi:
10.1021/acs.est.3c00159.
4. Kim JJ, Seong HJ, Johnson TA, Cha CJ, Sul WJ,
Chae JC. 2023. Persistence of antibiotic resistance from animal
agricultural effluents to surface water revealed by genome-centric metagenomics.
J Hazard Mater. 457:131761. doi: 10.1016/j.jhazmat.2023.131761.
5. Lee, K., Raguideau, S., Sirén,
K. Asnicar F, Cumbo F, Hildebrand F, Segata N, Cha
CJ*, Quince C*. 2023. Population-level impacts of antibiotic
usage on the human gut microbiome. Nat Commun 14:1191.
doi:10.1038/s41467-023-36633-7. *Co-corresponding author
6. Kim, M., Kim, YS.
& Cha CJ. 2023. Chryseobacterium paludis sp.
nov. and Chryseobacterium foetidum sp. nov. Isolated from the
Aquatic Environment, South Korea. J Microbiol. 61:37–47.
doi:10.1007/s12275-022-00008-2.
7. Kim DW, Ahn JH, Cha CJ. 2022. Biodegradation
of plastics: mining of plastic-degrading microorganisms and enzymes using
metagenomics approaches. J Microbiol. 60(10):969-976. doi:
10.1007/s12275-022-2313-7.
8. Lee DH, Cha JH, Kim DW, Lee K, Kim YS, Oh HY, Cho
YH, Cha CJ. 2022. Colistin-degrading proteases
confer collective resistance to microbial communities during polymicrobial
infections. Microbiome. 10(1):129. doi: 10.1186/s40168-022-01315-x.
9. Oh S, Kim Y, Choi D, Park JW, Chung SY, Maeng SK, Cha
CJ. 2022. Effects of biochar addition on the fate of
ciprofloxacin an its associated antibiotic tolerance in an activated sludge
microbiome. Environ Pollut. 1;1306:119407. doi:
10.1016/j.envpol.2022.119407.
10. Park EH,
Kim YS, Cha CJ. 2022. Commamonas fluminis sp.
nov., isolated from the Han River, Republic of korea. Int J Syst Evol
Microbiol. 72(3). doi: 10.1099/ijsem.0.005287.
11. Chau LTT,
Kim YS, Cha CJ. 2022. Pedobacter qauae sp.
nov., a multi-drug resistant bacterium isolated from fresh water. Antonie
Van Leewenhoek. 115(3):445-457. doi:
10.1007/s10482-022-01708-w
12. Cha JH,
Hong M and Cha CJ. 2021. Fungal β-Glycosidase Belonging
to Subfamily 4 of Glycoside Hydrolase Family 30 with Transglycosylation
Activity. J Agric Food Chem. 69(50):15261-15267. doi:
10.1021/acs.jafc.1c05197.
13. Borsetto C,
Raguideau S,
Travis E, Kim DW, Lee DH, Bottrill A, Stark R, Song L, Cha CJ,
Pearson J, Quince C, Singer AC, Wellington EMH. 2021. Impact of
sulfamethoxazole on a riverine microbiome. Water Res. 1;201:117382.
doi: 10.1016/j.waters.2021.117382.
14. Kim DW
and Cha CJ. 2021. Antibiotic resistome from the
One-Health perspective: understanding and controlling antimicrobial resistance
transmission. Exp Mol Med. 53(3):301-309. doi:
10.1038/s12276-021-00569-z.