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1.     Lee, DH., Lee, K., Kim, YS., Cha CJ. 2024. Comprehensive genomic landscape of antibiotic resistance in Staphylococcus epidermidis. mSystems 0:e00226-24.https://doi.org/10.1128/msystems.00226-24

2.     Kim, YS., Hwang, EM., Jeong, CM., Cha CJ2023. Flavobacterium psychrotrophum sp. nov. and Flavobacterium panacagri sp. nov., Isolated from Freshwater and Soil. J Microbiol. 61:891–901. https://doi.org/10.1007/s12275-023-00081-1

3.     Yin X, Chen X, Jiang XT, Yang Y, Li B, Shum MH, Lam TTY, Leung GM, Rose J, Sanchez-Cid C, Vogel TM, Walsh F, Berendonk TU, Midega J, Uchea C, Frigon D, Wright GD, Bezuidenhout C, Picão RC, Ahammad SZ, Nielsen PH, Hugenholtz P, Ashbolt NJ, Corno G, Fatta-Kassinos D, Bürgmann H, Schmitt H, Cha CJ, Pruden A, Smalla K, Cytryn E, Zhang Y, Yang M, Zhu YG, Dechesne A, Smets BF, Graham DW, Gillings MR, Gaze WH, Manaia CM, van Loosdrecht MCM, Alvarez PJJ, Blaser MJ, Tiedje JM, Topp E, Zhang T. 2023. Toward a Universal Unit for Quantification of Antibiotic Resistance Genes in Environmental Samples. Environ Sci Technol. doi: 10.1021/acs.est.3c00159.

4.     Kim JJ, Seong HJ, Johnson TA, Cha CJ, Sul WJ, Chae JC. 2023. Persistence of antibiotic resistance from animal agricultural effluents to surface water revealed by genome-centric metagenomics. J Hazard Mater. 457:131761. doi: 10.1016/j.jhazmat.2023.131761.

5.     Lee, K., Raguideau, S., Sirén, K. Asnicar F, Cumbo F, Hildebrand F, Segata N, Cha CJ*, Quince C*. 2023. Population-level impacts of antibiotic usage on the human gut microbiome. Nat Commun 14:1191. doi:10.1038/s41467-023-36633-7. *Co-corresponding author

6.     Kim, M., Kim, YS. & Cha CJ. 2023Chryseobacterium paludis sp. nov. and Chryseobacterium foetidum sp. nov. Isolated from the Aquatic Environment, South Korea. J Microbiol. 61:37–47. doi:10.1007/s12275-022-00008-2.

7.     Kim DW, Ahn JH, Cha CJ. 2022. Biodegradation of plastics: mining of plastic-degrading microorganisms and enzymes using metagenomics approaches. J Microbiol. 60(10):969-976. doi: 10.1007/s12275-022-2313-7.

8.     Lee DH, Cha JH, Kim DW, Lee K, Kim YS, Oh HY, Cho YH, Cha CJ. 2022. Colistin-degrading proteases confer collective resistance to microbial communities during polymicrobial infections. Microbiome. 10(1):129. doi: 10.1186/s40168-022-01315-x.

9.     Oh S, Kim Y, Choi D, Park JW, Chung SY, Maeng SK, Cha CJ. 2022. Effects of biochar addition on the fate of ciprofloxacin an its associated antibiotic tolerance in an activated sludge microbiome. Environ Pollut. 1;1306:119407. doi: 10.1016/j.envpol.2022.119407.

10. Park EH, Kim YS, Cha CJ. 2022Commamonas fluminis sp. nov., isolated from the Han River, Republic of korea. Int J Syst Evol Microbiol. 72(3). doi: 10.1099/ijsem.0.005287.

11. Chau LTT, Kim YS, Cha CJ. 2022Pedobacter qauae sp. nov., a multi-drug resistant bacterium isolated from fresh water. Antonie Van Leewenhoek. 115(3):445-457. doi: 10.1007/s10482-022-01708-w  

12. Cha JH, Hong M and Cha CJ. 2021. Fungal β-Glycosidase Belonging to Subfamily 4 of Glycoside Hydrolase Family 30 with Transglycosylation Activity. J Agric Food Chem. 69(50):15261-15267. doi: 10.1021/acs.jafc.1c05197. 

13. Borsetto C, Raguideau S, Travis E, Kim DW, Lee DH, Bottrill A, Stark R, Song L, Cha CJ, Pearson J, Quince C, Singer AC, Wellington EMH. 2021. Impact of sulfamethoxazole on a riverine microbiome. Water Res. 1;201:117382. doi: 10.1016/j.waters.2021.117382. 

14. Kim DW and Cha CJ. 2021. Antibiotic resistome from the One-Health perspective: understanding and controlling antimicrobial resistance transmission. Exp Mol Med. 53(3):301-309. doi: 10.1038/s12276-021-00569-z.

15. Lee k, Kim DW and Cha CJ. 2021. Overview of bioinformatic methods for analysis of antibiotic resistome from genome and metagenome data. J Microbiol. 59(3):270-280. doi: 10.1007/s12275-021-0652-4. 

16. Kim YS, Jang SH, and Cha CJ. 2021Myroides fluvii sp. nov., isolated from the Han River. Int J Syst Evol Microbiol. 71(2). doi: 10.1099/ijsem.0.004623. 

17. Redhead S, Nieuwland J, Esteves S, Lee DH, Kim DW, Mathias J, Cha CJ, Toleman M, Dinsdale R, Guwy A, Hayhurst E. 2020. Fate of antibiotic resistant E. coli and antibiotic resistance genes during full scale conventional and advanced anaerobic digestion of sewage sludge. PLoS One. 15(12):e0237283. doi: 10.1371/journal.pone.0237283.

18. Moon K, Jeon JH, Kang I, Park KS, Lee K, Cha CJ, Lee SH, Cho JC. 2020. Freshwater viral metagenome reveals novel and functional phage-borne antibiotic resistance genes. Microbiome. 8(1):75. doi: 10.1186/s40168-020-00863-4.

19. Lee, K., D.-W. Kim, D.-H. Lee, Y.-S. Kim, J.-H. Bu, J.-H. Cha, C. N. Thawng, E.-M. Hwang, H. J. Seong, W. J. Sul, E. M. H. Wellington, C. Quince and C.-J. Cha. 2020. Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance. Microbiome. 8(1):2. doi: 10.1186/s40168-019-0774-7.

20. Lee, J. Y., H. Lee, M. Park, C.-J. Cha, D. Shin and K. S. Ko. 2019. Lytic transglycosylase contributes to the survival of lipooligosaccharide-deficient, colistin-dependent Acinetobacter baumannii. Clin. Microbiol. Infect. S1198-743X(19): 30050-3. doi: 10.1016/j.cmi.2019.02.004

21. Kim, D.-W., C. N. Thawng, K. Lee, E. M. H. Wellington and C.-J. Cha. 2019. A novel sulfonamide resistance mechanism by two-component flavin-dependent monooxygenase system in sulfonamide-degrading actinobacteria. Environ. Int. 127:206-215

22. Oh, S., D. Choi and C.-J. Cha. 2019. Ecological processes underpinning microbial community structure during exposure to subinhibitory level of triclosan. Sci. Rep. 9(1):4598

23. Kim, D.-W., K. Lee, D.-H. Lee and C.-J. Cha. 2018. Comparative genomic analysis of pyrene-degrading Mycobacterium species: Genomic islands and ring-hydroxylating dioxygenases involved in the pyrene degradation. J. Microbiol. 56(11):798-804

24. Cha, J.-H., J. J. Yoon and C.-J. Cha. 2018. Functional characterization of a thermostable endoglucanase belonging to glycoside hydrolase family 45 from Fomitopsis palustris. Appl. Microbiol. Biotechnol. 102(15): 6515-6523

25. Kim, D.-W., C. N. Thawng, K. Lee and C.-J. Cha. 2018. Revisiting Polymorphic Diversity of Aminoglycoside N-Acetyltransferase AAC(6’)-Ib Based on Bacterial Genomes of Human, Animal, and Environmental Origins. Front. Microbiol. doi:10.3389/fmicb.2018.01831

26. Choi, J.-H, K. Lee, D.-W. Kim, D. Y. Kil, G.-B. Kim and C.-J. Cha. 2018. Influence of dietary avilamycin on ileal and cecal microbiota in broiler chickens. Poult. Sci. 97(3): 970-979

27. Kim, Y.-S. and C.-J. Cha. 2018. Paenibacillus translucens sp. nov., isolated from tidal flat sediment. Int. J. Sys. Evol. Microbiol. 68(3): 936-941

28. Bu, J.-H. and C.-J. Cha. 2018. Flavobacterium foetidum sp. nov., isolated from ginseng soil. Int. J. Sys. Evol. Microbiol. 68(2): 616-622

29. Nahar, S. and C.-J. Cha. 2018. Paenibacillus limicola sp. nov., isolated from tidal flat sediment. Int. J. Sys. Evol. Microbiol. 68(1): 423-426

30. Kim, D.-W., C. N. Thawng, J.-H Choi, K. Lee and C.-J. Cha. 2018. Polymorphism of antibiotic-inactivating enzyme driven by ecology expands the environmental resistome. ISME J. 12: 267-276

31. Lee, CR, JH Lee, KS Park, JH Jeon, YB Kim, C.-J. Cha, BC Jeong and SH Lee. 2017. Antimicrobial Resistance of Hypervirulent Klebsiella pneumoniae: Epidemiology, Hypervirulence-Associated Determinants, and Resistance Mechanisms. Front. Cell. Infect. Microbiol. 7:483. doi: 10.3389/fcimb.2017.00483

32. Lee, D.-H. and C.-J. Cha. 2017. Ramlibacter alkalitolerans sp. nov., alkali-tolerant bacterium isolated from soil of ginseng. Int. J. Sys. Evol. Microbiol. 67(11): 4619-4623

33. Kim, D.-W., C. N. Thawng, S. H. Lee and C.-J. Cha. 2017. Unique Features of Aeromonas Plasmid pAC3 and Expression of the Plasmid-Mediated Quinolone Resistance Genes. mSphere. 2(3): e00203-17

34. Lee, CR, JH Lee, M Park, KS Park, IK Bae, YB Kim, C.-J. Cha, BC Jeong and SH Lee. 2017. Biology of Acinetobacter baumannii: Pathogenesis, Antibiotic Resistance Mechanisms, and Prospective Treatment Options. Front. Cell. Infect. Microbiol. 7:55. doi: 10.3389/fcimb.2017.00055

35. Lee, D.-H. and C.-J. Cha. 2016. Flavihumibacter sediminis sp. nov., isolated from tidal flat sediment. Int. J. Sys. Evol. Microbiol. 66(11): 4310–4314

36. Choi, J.-H., J.-H. Seok, H.-J. Jang, J.-H. Cha and C.-J. Cha. 2016. Cohnella saccharovorans sp. nov., isolated from ginseng soil. Int. J. Sys. Evol. Microbiol. 66(4): 1713–1717

37. Song, K., J. Lee, C.-J. Cha and H. Kang. 2015. Effects of Phragmites invasion on soil microbial activity and structure in a brackish marsh. Plant Soil. 392(1): 45–56

38. Unno, T., J.-H. Choi, H.-G. Hur, M. J. Sadowsky, Y.-T. Ahn, C.-S. Huh, G. B. Kim and C.-J. Cha. 2015. Changes in human gut microbiota influenced by probiotic fermented milk ingestion. J. Dairy Sci. 98(6): 3568-3576

39. Choi, J.-H., K. M. Lee, M. K. Lee, C.-J. Cha. And G. B. Kim. 2014. Bifidobacterium faecale sp. nov., isolated from human feces. Int. J. Sys. Evol. Microbiol. 64(9): 3134-3139

40. Choi, J. H., G. B. Kim and C.-J. Cha. 2014. Spatial heterogeneity and stability of bacterial community in the gastrointestinal tracts of broiler chickens. Poult. Sci. 93(8): 1942-1950

41. Choi, J.-H., J.-H. Seok, J.-H. Cha and C.-J. Cha. 2014. Lysobacter panacisoli sp. nov., isolated from ginseng soil. Int. J. Sys. Evol. Microbiol. 64(7): 2193–2197

42. Kim, B.-S., H. Yi, J. Chun and C.-J. Cha. 2014. Genome sequence of type strain of Staphylococcus aureus subsp. aureus. Gut Pathogens. 6(1): 6

43. Choi, J.-H., and C.-J. Cha. 2014. Bacillus panacisoli sp. nov., isolated from ginseng soil. Int. J. Sys. Evol. Microbiol. 64(3): 901–906

44. Yi, H, J. Chun and C.-J. Cha. 2014. Genomic insights into the taxonomic status of the three subspecies of Bacillus subtilisSys. Appl. Microbiol. 37(2): 95-9

45. Rahman, M. M., and C.-J. Cha. 2013. Ferrimonas gelatinilytica sp. nov., isolated from tidal flat sediment. Int. J. Sys. Evol. Microbiol. 63(11): 4309-4314

46. Park, S. J., J.-H. Choi, C.-J. Cha. 2013. Chryseobacterium aestuarii sp. nov., isolated from the wetland of Han River, Korea. Int. J. Sys. Evol. Microbiol. 63(3): 1062-1068

47. Thawng, C. N., S. J. Park, Cha JH, C.-J. Cha. 2013. Stakelama sediminis sp. nov., isolated from tidal flat sediment. Int. J. Sys. Evol. Microbiol. 63(2): 560 - 564

48. Kim, Y.-H., W.-S. Song, H. Go, C.-J. Cha, C. Lee, M.-H. Yu, P. C. K. Lau, K. Lee. 2013. 2-Nitrobenzoate 2-nitroreductase (NbaA) switches its substrate specificity from 2-nitrobenzoic acid to 2,4-dinitrobenzoic acid under oxidizing conditions. J. Bacteriol. 195(2): 180-192.

49. Cha, J.-H., C.-J. Cha. 2013. Gordonia alkaliphila sp. nov., an actinomycete isolated from tidal flat sediment from the Yellow Sea, Korea. Int. J. Sys. Evol. Microbiol. 63(1): 327 - 331

50. Park, E.J., J. Chun, C.-J. Cha, W. S. Park, C. O. Jeon and J. W. Bae. 2012. Bacterial community analysis during fermentation of ten representative kinds of kimchi with barcoded pyrosequencing. Food Microbiol. 30(1): 197-204.

51. Yeo, I. C., N. K. Lee, C.-J. Cha and Y. T. Hahm. 2012. Interspecies Interaction of Signal Peptide PapR Secreted by Bacillus cereus and Its Effect on Production of Antimicrobial Peptide. Appl. Biochem. Biotechnol. 66(3): 700-710.

52. Go, H., C. J. Moore, M. Lee, E. Shin, C. O. Jeon, C.-J. Cha, S. H. Han, S.-J. Kim, S.-W. Lee, Y. Lee, N.-C. Ha, Y.-H. Kim, S. N. Cohen and K. Lee. 2011. Upregulation of RNase E activity by mutation of a site that uncompetitively interferes with RNA binding. RNA Biology. 8(6): 1022-1034.

53. Kim, H.-J., H.-J., S.-J. Eom, S.-J. Park, C.-J. Cha and G.-B. Kim. 2011. Lactobacillus alvi sp. nov., isolated from the intestinal tract of chicken. FEMS Microbiol. Lett. 323(1): 83-87.

54. Ham, J.-S., H.-W. Kim, K.-H. Seol, A. Jang, S.-G. Jeong, M.-H. Oh, D.-H. Kim, D.-K. Kang, G.-B. Kim and C.-J. Cha. 2011. Genome Sequence of Lactobacillus salivarius NIAS840, Isolated from Chicken Intestine. J. Bacteriol. 193(19): 5551-5552.

55. Yeo, I. C., N. K. Lee, C.-J. Cha and Y. T. Hahm. 2011. Narrow antagonistic activity of antimicrobial peptide from Bacillus subtilis SCK-2 against Bacillus cereusJ Biosci. Bioeng. 112(4): 338-344.

56. Choi, J. Y., A. R. Park, Y. J. Kim, J. J. Kim, C.-J. Cha and J. J. Yoon. 2011. Purification and characterization of an extracellular beta-glucosidase produced by Phoma sp. KCTC11825BP isolated from rotten mandarin peel. J. Microbiol. Biotechnol. 21(5): 503-508.

57. Thawng, C. N., J.-Y. Ryu, J. Han, C.-J. Cha, and H.-G. Hur. 2011. Biotransformation of N-Heterocyclic Compounds 1-Phenylpyrazole and 1-Phenylpyrrole by Escherichia coli (pDTG141) Expressing Naphthalene Dioxygenase of Pseudomonas sp. Strain NCIB 9816-4. J. Korean Soc. Appl. Biol. Chem. 54(2): 229-236.

58. Kim, K.-Y., S. J. Park, Y. T. Hahm and C.-J. Cha. 2011. Marinitalea sucinacia gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from tidal flat sediment. FEMS Microbiol. Lett. 314(1): 89-94

59. Ji, H. W. and C.-J. Cha. 2010. Identification and Functional Analysis of a Gene Encoding β-Glucosidase from the Brown-Rot Basidiomycete Fomitopsis palustrisJ. Microbiol. 48(6): 808-813

60. Choi, M.-J., J.-Y. Bae, K.-Y. Kim, H. Kang and C.-J. Cha. 2010. Brevibacillus fluminis sp. nov., isolated from the sediment of estuarine wetland of Han river, Korea. Int. J. Sys. Evol. Microbiol. 60(7): 1595-1599

61. Kim, K.-Y., S. Lee and C.-J. Cha. 2010. Biotransformation of Plant Secondary Metabolite Decursin by Mycobacterium sp. PYR1001. J. Agric. Food Chem. 58(5): 2931-2934

62. Bae, J.-Y., J.-H. Kim, K.-Y. Kim, K. Lee, J.-C. Cho and C.-J. Cha. 2010. Paenibacillus aestuarii sp. nov., isolated from the estuarine wetland of Han river, Korea. Int. J. Syst. Evol. Microbiol. 60(3): 644-647

63. Sim, S. H., J. H. Yeom, C. Shin, W. S. Song, E. Shin, H. M. Kim, C.-J. Cha, S. H. Han, N. C. Ha, S. W. Kim, Y. Hahn, J. Bae and K. Lee. 2010. Escherichia coli ribonuclease III activity is downregulated by osmotic stress: consequences for the degradation of bdm mRNA in biofilm formation. Mol. Microbiol. 75(2): 413-425

64. Kim, J.-H., K.-Y. Kim and C.-J. Cha. 2009. Flavobacterium chungangense sp. nov., isolated from a freshwater lake. Int. J. Syst. Evol. Microbiol. 59(7): 1754-1758

65. Kim, H. M., S. M. Ryou, W.S. Song, S.H. Sim, C.-J. Cha, S. H. Han, N. C. Ha, J. H. Kim, J. Bae, P. R. Cunningham, K. Lee. 2009. Genetic analysis of the invariant residue G791 in Escherichia coli 16S rRNA implicates RelA in ribosome function. J. Bacteriol. 191(7): 2042-2050

66. Kim, Y.-H., C.-J. Cha, K. H. Engesser, S.J. Kim. 2008. Degradation of various alkyl ethers by alkyl ether-degrading Actinobacteria isolated from activated sludge of a mixed wastewater treatment. Chemosphere. 73(9): 1442-1447

67. Yoon, J.-J., C.-J. Cha, Y.-S. Kim and W. Kim. 2008. Degradation of cellulose by the major endoglucanase produced from the brown-rot fungus Fomitopsis pinicolaBiotechnol. Lett. 30(8): 1373-1378

68. Kim, E.-K., C.-J. Cha, Y.-J. Cho, Y.-B. Cho and J.-H. Roe. 2008. Synthesis of gamma-glutamylcysteine as a major low-molecular-weight thiol in lactic acid bacteria Leuconostoc spp. Biochem. Biophys. Res. Commun. 369(4): 1047-1051

69. Song, B.-C., K.-Y. Kim, J.-J. Yoon, S.-H. Sim, K. Lee, Y.-S. Kim, Y.-K. Kim, C.-J. Cha. 2008. Functional Analysis of a Gene Encoding Endoglucanase that Belongs to Glycosyl Hydrolase Family 12 from the Brown-Rot Basidiomycete Fomitopsis palustris. J. Microbiol. Biotechnol. 18(3): 404-409

70. Yoon, J.-J., K-Y Kim and C.-J. Cha. 2008. Purification and Characterization of Thermostable b-Glucosidase from the Brown-Rot Basidiomycete Fomitopsis palustris Grown on Microcrystalline Cellulose. J. Microbiol. 46(1): 51-55

71. Kim, J.-H., K.-Y. Kim, Y.-T. Hahm, B.-S. Kim, J. Chun and C.-J. Cha. 2008. Actibacter sediminis gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from tidal flat sediment. Int. J. Sys. Evol. Microbiol. 58(1): 139-143

72. Song, W. S., H. M. Kim, J. H. Kim, S. H. Sim, S. M. Ryou, S. Kim, C.-J. Cha, P. R. Cunningham, J. Bae, K. Lee. 2007. Functional analysis of the invariant residue G791 of Escherichia coli 16S rRNA. J. Microbiol. 45(5): 418-421

73. Kim, H. L., E. K. Shin, H. M. Kim, S. M. Ryou, S. Kim, C.-J. Cha, J. Bae, K. Lee. 2007. Heterogeneous rRNAs are differentially expressed during the morphological development of Streptomyces coelicolor. FEMS Microbiol. Lett. 275(1): 146-152

74. Yoon, J.-J., C.-J. Cha, Y.-S. Kim, D.-W. Son, and Y.-K. Kim. 2007. The Brown-Rot Basidiomycete Fomitopsis palustris Has the Endo-Glucanases Capable of Degrading Microcrystalline Cellulose. J. Microbiol. Biotechnol. 17(5): 800-805

75. Cha, C.-J. 2006. Catechol 1,2-dioxygenase from Rhodococcus rhodochrous N75 capable of metabolizing alkyl-substituted catechols. J. Microbiol. Biotechnol. 16(5): 778-785

76. Park, J.-H., C.-J. Cha and J.-H. Roe. 2006. Identification of genes for the mycothiol biosynthesis in Streptomyces coelicolor A3(2). J. Microbiol. 44(1): 121-125

77. Lee, E.-J., N. Karoonuthaisiri, H.-S. Kim, J.-H. Park, C.-J. Cha, C. M. Kao and J.-H. Roe. 2005. A master regulator sigB governs osmotic and oxidative response as well as differentiation via a network of sigma factors in Streptomyces coelicolorMol. Microbiol. 57(5): 1252-1264

78. Shin, K.-H., Y. Lim, J.-H. Ahn, J. Khil, C.-J. Cha and H.-G. Hur. 2005. Anaerobic biotransformation of dinitrotoluene isomers by Lactococcus lactis subsp. lactis strain 27 isolated from earthworm intestine. Chemosphere. 61(1): 30-39

79. Seo, J., Y.-G. Lee, S.-D. Kim, C.-J. Cha, J.-H. Ahn and H.-G. Hur. 2005. Biodegradation of Insecticide N,N- Diethyl-m-Toluamide (DEET) by Fungi: Identification and Toxicity of Its Metabolites. Arch. Environ. Contam. Toxicol. 48(3): 323-328

80. Kim, S.-J., R. C. Jones, C.-J. Cha, O. Kweon, R. D. Edmondson and C. E. Cerniglia. 2004. Identification of Proteins Induced by Polycyclic Aromatic Hydrocarbon in Mycobacterium vanbaalenii PYR-1 Using Two-Dimensional Polyacrylamide Gel Electrophoresis and de novo Sequencing Methods. Proteomics. 4(12): 3899-3908

81. Cha, C.-J. and N. C. Bruce. 2003. Stereo- and regiospecific cis,cis-muconate cycloisomerization by Rhodococcus rhodochrous N75. FEMS Microbiol. Lett. 224(1): 29-34

82. Cha, C.-J., S.-J. Kim, Yong-Hak Kim, Robin Stingley and C. E. Cerniglia. 2002. Molecular cloning, expression and characterization of a novel glutathione S-transferase class from the fungus Cunninghamella elegans. Biochem. J. 368(2): 589-595

83. Kim, Y.-H., C.-J. Cha and C. E. Cerniglia. 2002. Purification and characterization of an erythromycin esterase from an erythromycin-resistant Pseudomonas sp. FEMS Microbiol. Lett. 210(2): 239-244

84. Cha, C.-J., B. F. Coles and C. E. Cerniglia. 2001. Purification and characterization of a glutathione S-transferase from the fungus Cunninghamella elegansFEMS Microbiol. Lett. 203(2): 257-261

85. Cha, C.-J., D. R. Doerge and C. E. Cerniglia. 2001. Biotransformation of malachite green by the fungus Cunninghamella elegansAppl. Environ. Microbiol. 67(9): 4358-4360

86. Cha, C.-J. 2001. Biological production of optically active muconolactones by Rhodococcus rhodochrousAppl. Microbiol. Biotechnol. 56(3-4): 453-457

87. Cha, C.-J., R. B. Cain and N. C. Bruce. 1998. Enzymology of 3-methylmuconolactone metabolism in Rhodococcus rhodochrous N75: a modified ortho-cleavage pathway. J. Bacteriol. 180(24): 6668-6673