1.
Kim, YJ., Kim, YS. & Cha, CJ. 2024. Taxonomic
and genomic characterization of a siderophore-producing bacterium, Rhodoligotrophos
ferricapiens sp. nov isolated from lettuce cultivation soil. Antonie
van Leeuwenhoek 118, 43. doi: 10.1007/s10482-024-02052-xs
2.
Lee, DH., Lee, K., Kim, YS., Cha CJ. 2024.
Comprehensive genomic landscape of antibiotic resistance in Staphylococcus
epidermidis. mSystems 0:e00226-24.https://doi.org/10.1128/msystems.00226-24
3.
Kim, YS., Hwang, EM.,
Jeong, CM., Cha CJ. 2023. Flavobacterium psychrotrophum sp.
nov. and Flavobacterium panacagri sp. nov., Isolated from
Freshwater and Soil. J Microbiol. 61:891–901.
https://doi.org/10.1007/s12275-023-00081-1
4.
Yin X, Chen X, Jiang XT, Yang Y, Li B, Shum MH, Lam
TTY, Leung GM, Rose J, Sanchez-Cid C, Vogel TM, Walsh F, Berendonk TU, Midega
J, Uchea C, Frigon D, Wright GD, Bezuidenhout C, Picão RC, Ahammad SZ, Nielsen
PH, Hugenholtz P, Ashbolt NJ, Corno G, Fatta-Kassinos D, Bürgmann H, Schmitt H,
Cha CJ, Pruden A, Smalla K, Cytryn E, Zhang Y, Yang M, Zhu YG, Dechesne
A, Smets BF, Graham DW, Gillings MR, Gaze WH, Manaia CM, van Loosdrecht MCM,
Alvarez PJJ, Blaser MJ, Tiedje JM, Topp E, Zhang T. 2023. Toward
a Universal Unit for Quantification of Antibiotic Resistance Genes in
Environmental Samples. Environ Sci Technol. doi:
10.1021/acs.est.3c00159.
5.
Kim JJ, Seong HJ, Johnson TA, Cha CJ, Sul WJ,
Chae JC. 2023. Persistence of antibiotic resistance from animal
agricultural effluents to surface water revealed by genome-centric metagenomics.
J Hazard Mater. 457:131761. doi: 10.1016/j.jhazmat.2023.131761.
6.
Lee, K., Raguideau, S., Sirén, K. Asnicar F, Cumbo F, Hildebrand F, Segata N, Cha
CJ*, Quince C*. 2023. Population-level impacts of antibiotic
usage on the human gut microbiome. Nat Commun 14:1191.
doi:10.1038/s41467-023-36633-7. *Co-corresponding author
7.
Kim, M., Kim, YS.
& Cha CJ. 2023. Chryseobacterium paludis sp.
nov. and Chryseobacterium foetidum sp. nov. Isolated from the
Aquatic Environment, South Korea. J Microbiol. 61:37–47.
doi:10.1007/s12275-022-00008-2.
8.
Kim DW, Ahn JH, Cha CJ. 2022. Biodegradation
of plastics: mining of plastic-degrading microorganisms and enzymes using
metagenomics approaches. J Microbiol. 60(10):969-976. doi:
10.1007/s12275-022-2313-7.
9.
Lee DH, Cha JH, Kim DW, Lee K, Kim YS, Oh HY, Cho
YH, Cha CJ. 2022. Colistin-degrading proteases
confer collective resistance to microbial communities during polymicrobial
infections. Microbiome. 10(1):129. doi: 10.1186/s40168-022-01315-x.
10.
Oh S, Kim Y, Choi D, Park JW, Chung SY, Maeng SK, Cha
CJ. 2022. Effects of biochar addition on the fate of
ciprofloxacin an its associated antibiotic tolerance in an activated sludge
microbiome. Environ Pollut. 1;1306:119407. doi:
10.1016/j.envpol.2022.119407.
11.
Park EH, Kim YS, Cha CJ. 2022. Commamonas
fluminis sp. nov., isolated from the Han River, Republic of
korea. Int J Syst Evol Microbiol. 72(3). doi:
10.1099/ijsem.0.005287.
12.
Chau LTT, Kim YS, Cha CJ. 2022. Pedobacter
qauae sp. nov., a multi-drug resistant bacterium isolated from fresh
water. Antonie Van Leeuwenhoek. 115(3):445-457. doi:
10.1007/s10482-022-01708-w
13.
Cha JH, Hong M and Cha CJ. 2021.
Fungal β-Glycosidase Belonging to Subfamily 4 of Glycoside Hydrolase Family 30
with Transglycosylation Activity. J Agric Food Chem. 69(50):15261-15267.
doi: 10.1021/acs.jafc.1c05197.
14.
Borsetto C, Raguideau S, Travis E, Kim DW, Lee DH,
Bottrill A, Stark R, Song L, Cha CJ, Pearson J, Quince C, Singer
AC, Wellington EMH. 2021. Impact of sulfamethoxazole on a riverine
microbiome. Water Res. 1;201:117382. doi:
10.1016/j.waters.2021.117382.
15.
Kim DW and Cha CJ. 2021.
Antibiotic resistome from the One-Health perspective: understanding and
controlling antimicrobial resistance transmission. Exp Mol Med. 53(3):301-309. doi:
10.1038/s12276-021-00569-z.
16.
Lee k, Kim DW and Cha CJ. 2021.
Overview of bioinformatic methods for analysis of antibiotic resistome from
genome and metagenome data. J Microbiol. 59(3):270-280. doi:
10.1007/s12275-021-0652-4.
17.
Kim YS, Jang SH, and Cha CJ. 2021. Myroides fluvii sp.
nov., isolated from the Han River. Int J Syst Evol Microbiol. 71(2).
doi: 10.1099/ijsem.0.004623.
18.
Redhead S, Nieuwland J, Esteves S, Lee DH, Kim DW,
Mathias J, Cha CJ, Toleman M, Dinsdale R, Guwy A, Hayhurst E. 2020.
Fate of antibiotic resistant E. coli and antibiotic resistance
genes during full scale conventional and advanced anaerobic digestion of sewage
sludge. PLoS One. 15(12):e0237283. doi:
10.1371/journal.pone.0237283.
19.
Moon K, Jeon JH, Kang I, Park KS, Lee K, Cha CJ,
Lee SH, Cho JC. 2020. Freshwater viral metagenome reveals novel and
functional phage-borne antibiotic resistance genes. Microbiome. 8(1):75.
doi: 10.1186/s40168-020-00863-4.
20.
Lee, K., D.-W. Kim, D.-H. Lee, Y.-S. Kim, J.-H. Bu,
J.-H. Cha, C. N. Thawng, E.-M. Hwang, H. J. Seong, W. J. Sul, E. M. H.
Wellington, C. Quince and C.-J. Cha. 2020. Mobile resistome of
human gut and pathogen drives anthropogenic bloom of antibiotic
resistance. Microbiome. 8(1):2. doi:
10.1186/s40168-019-0774-7.
21.
Lee, J. Y., H. Lee, M. Park, C.-J. Cha, D.
Shin and K. S. Ko. 2019. Lytic transglycosylase contributes to the survival of
lipooligosaccharide-deficient, colistin-dependent Acinetobacter
baumannii. Clin. Microbiol. Infect. S1198-743X(19): 30050-3.
doi: 10.1016/j.cmi.2019.02.004
22.
Kim, D.-W., C. N. Thawng, K. Lee, E. M. H. Wellington
and C.-J. Cha. 2019. A novel sulfonamide resistance mechanism
by two-component flavin-dependent monooxygenase system in sulfonamide-degrading
actinobacteria. Environ. Int. 127:206-215
23.
Oh, S., D. Choi and C.-J. Cha. 2019.
Ecological processes underpinning microbial community structure during exposure
to subinhibitory level of triclosan. Sci. Rep. 9(1):4598
24.
Kim, D.-W., K. Lee, D.-H. Lee and C.-J. Cha.
2018. Comparative genomic analysis of pyrene-degrading Mycobacterium species:
Genomic islands and ring-hydroxylating dioxygenases involved in the pyrene
degradation. J. Microbiol. 56(11):798-804
25.
Cha, J.-H., J. J. Yoon and C.-J. Cha. 2018.
Functional characterization of a thermostable endoglucanase belonging to
glycoside hydrolase family 45 from Fomitopsis palustris. Appl.
Microbiol. Biotechnol. 102(15): 6515-6523
26.
Kim, D.-W., C. N. Thawng, K. Lee and C.-J. Cha.
2018. Revisiting Polymorphic Diversity of Aminoglycoside N-Acetyltransferase
AAC(6’)-Ib Based on Bacterial Genomes of Human, Animal, and Environmental
Origins. Front. Microbiol. doi:10.3389/fmicb.2018.01831
27.
Choi, J.-H, K. Lee, D.-W. Kim, D. Y. Kil, G.-B. Kim
and C.-J. Cha. 2018. Influence of dietary avilamycin on ileal and
cecal microbiota in broiler chickens. Poult. Sci. 97(3):
970-979
28.
Kim, Y.-S. and C.-J. Cha. 2018. Paenibacillus
translucens sp. nov., isolated from tidal flat sediment. Int.
J. Sys. Evol. Microbiol. 68(3): 936-941
29.
Bu, J.-H. and C.-J. Cha. 2018. Flavobacterium
foetidum sp. nov., isolated from ginseng soil. Int. J. Sys.
Evol. Microbiol. 68(2): 616-622
30.
Nahar, S. and C.-J. Cha. 2018. Paenibacillus
limicola sp. nov., isolated from tidal flat sediment. Int. J.
Sys. Evol. Microbiol. 68(1): 423-426